Showing posts with label biotechnology. Show all posts
Showing posts with label biotechnology. Show all posts

4/04/2013

Stanford creates biological transistors, the final step towards computers inside living cells



Πηγή: ExtremeTech
By Sebastian Anthony
March 29 2013

Bioengineers at Stanford University have created the first biological transistor made from genetic materials: DNA and RNA. Dubbed the “transcriptor,” this biological transistor is the final component required to build biological computers that operate inside living cells. We are now tantalizingly close to biological computers that can detect changes in a cell’s environment, store a record of that change in memory made of DNA, and then trigger some kind of response — say, commanding a cell to stop producing insulin, or to self-destruct if cancer is detected.

Stanford’s transcriptor is essentially the biological analog of the digital transistor. Where transistors control the flow of electricity, transcriptors control the flow of RNA polymerase as it travels along a strand of DNA. The transcriptors do this by using special combinations of enzymes (integrases) that control the RNA’s movement along the strand of DNA. “The choice of enzymes is important,” says Jerome Bonnet, who worked on the project. “We have been careful to select enzymes that function in bacteria, fungi, plants and animals, so that bio-computers can be engineered within a variety of organisms.”

Like a transistor, which enables a small current to turn on a larger one, one of the key functions of transcriptors is signal amplification. A tiny change in the enzyme’s activity (the transcriptor’s gate) can cause a very large change in the two connected genes (the channel). By combining multiple transcriptors, the Stanford researchers have created a full suite of Boolean Integrase Logic (BIL) gates — the biological equivalent of AND, NAND, OR, XOR, NOR, and XNOR logic gates. With these BIL gates (pun possibly intended), a biological computer could perform almost computation inside a living cell.

You need more than just BIL gates to make a computer, though. You also need somewhere to store data (memory, RAM), and some way to connect all of the transcriptors and memory together (a bus). Fortunately, as we’ve covered a few times before, numerous research groups have successfully stored data in DNA — and Stanford has already developed an ingenious method of using the M13 virus to transmit strands of DNA between cells. (See:Harvard cracks DNA storage, crams 700 terabytes of data into a single gram.) In short, all of the building blocks of a biological computer are now in place.

This isn’t to say that highly functional biological computers will arrive in short order, but we should certainly begin to see simple biological sensors that measure and record changes in a cell’s environment. Stanford has contributed the BIL gate design to the public domain, which should allow other research institutes, such as Harvard’s Wyss Institute, to also begin work on the first biological computer. 

Moving forward, though, the potential for real biological computers is immense. We are essentially talking about fully-functional computers that can sense their surroundings, and then manipulate their host cells into doing just about anything. Biological computers might be used as an early-warning system for disease, or simply as a diagnostic tool (has the patient consumed excess amounts of sugar, even after the doctor told them not to?) Biological computers could tell their host cells to stop producing insulin, to pump out more adrenaline, to reproduce some healthy cells to combat disease, or to stop reproducing if cancer is detected. Biological computers will probably obviate the use of many pharmaceutical drugs.


7/25/2012

Artificial jellyfish created from heart cells

The artificial jellyfish replica is made from silicone polymer and rat heart cells

Πηγή: BBC
July 23 2012

Scientists in the US have created a free swimming artificial jellyfish.

The team members built the replica using silicone as a base on which to grow heart muscle cells that were harvested from rats.

They used an electric current to shock the Medusoid into swimming with synchronised contractions that mimic those of real jellyfish.

The advance, by researchers at Caltech and Harvard University, is reported in the journal Nature Biotechnology.

The finding serves as a proof of concept for reverse engineering a variety of muscular organs and simple life forms.

Because jellyfish use a muscle to pump their way through the water, the way they function - on a very basic level - is similar to that of a human heart.

"I started looking at marine organisms that pump to survive," said Kevin Kit Parker, a professor of bioengineering and applied physics at Harvard.

"Then I saw a jellyfish at the New England Aquarium, and I immediately noted both similarities and differences between how the jellyfish pumps and the human heart.

"The similarities help reveal what you need to do to design a bio-inspired pump."

Mechanical movement

The work also points to a broader definition of "synthetic life" in an emerging field of science that has until now focused on replicating life's building blocks, say the researchers.

Prof Parker said he wanted to challenge the traditional view of synthetic biology which is "focused on genetic manipulations of cells". Instead of building just a cell, he sought to "build a beast".

The two groups at Caltech and Harvard worked for years to understand the key factors that contribute to jellyfish propulsion, including the arrangement of their muscles, how their bodies contract and recoil, and how fluid dynamics helps or hinders their movements.


(Click on image to enlarge)

The swimming behaviour of the Medusoid closely mimics that of the real thing

Once these functions were well understood, the researchers began to reverse engineer them.

They used silicone to fashion a jellyfish-shaped body with eight arm-like appendages.

Next, they printed a pattern made of protein onto the "body" that resembled the muscle architecture of the real animal.

They grew the heart muscle cells on top, with the protein pattern serving as a road map for the growth and organisation of the rat tissue. This allowed them to turn the cells into a coherent swimming muscle.

When the researchers set the Medusoid free in a container of electrically conducting fluid, they shocked the Medusoid into swimming with synchronised contractions. The muscle cells even started to contract a bit on their own before the electrical current was applied.

"I was surprised that with relatively few components - a silicone base and cells that we arranged - we were able to reproduce some pretty complex swimming and feeding behaviours that you see in biological jellyfish," said John Dabiri, professor of aeronautics and bioengineering at Caltech.

"I'm pleasantly surprised at how close we are getting to matching the natural biological performance, but also that we're seeing ways in which we can probably improve on that natural performance. The process of evolution missed a lot of good solutions."

Lead author Janna Nawroth from the California Institute of Technology (Caltech) in Pasadena commented that the field of tissue engineering was "still a very qualitative art".

She said researchers tried to copy a tissue or organ "based on what they think is important or what they see as the major components without necessarily understanding if those components are relevant to the desired function or without analysing first how different materials could be used".

The team aims to carry out further work on the artificial jellyfish. They want to make adjustments that will allow it to turn and move in a particular direction.

They also plan to incorporate a simple "brain" so it can respond to its environment and replicate more advanced behaviours like moving towards a light source and seeking energy or food.



7/19/2012

Dozens of Genetically Modified Babies Already Born - How Will They Alter Human Species?


Πηγή: Mercola
By Dr, Mercola
July 17 2012

When I first read that genetically modified humans have already been born, I could hardly believe it. However, further research into this story featured in the UK's Daily Mail1 proved it to be true. They've really done it... they've created humans that nature could never allow for, and it's anyone's guess as to what will happen next.

Even more shocking was the discovery that this is actually old news!

The Daily Mail article was not dated, and upon investigation, the experiments cited actually took place over a decade ago; the study announcing their successful birth was published in 20012.

While I typically comment on recent findings and health related news, in this case I will make an exception, because I think many of you may be as surprised by this information as I was. I do not propose to have any answers here as this is out of my scope of expertise.

At best, I hope I can stir you to ponder the implications of this type of genetic engineering, and I invite you to share your perspective in the vital votes' comment section below. As reported in the featured article:

"The disclosure that 30 healthy babies were born after a series of experiments in the United States provoked another furious debate about ethics... Fifteen of the children were born... as a result of one experimental program at the Institute for Reproductive Medicine and Science of St Barnabas in New Jersey.

The babies were born to women who had problems conceiving. Extra genes from a female donor were inserted into their eggs before they were fertilized in an attempt to enable them to conceive.

Genetic fingerprint tests on two one-year- old children confirm that they have inherited DNA from three adults—two women and one man."

Human Germline Now Altered... What Happens Next?

Today, these children are in their early teens, and while the original study claims that this was "the first case of human germline genetic modification resulting in normal healthy children," later reports put such claims of absolute success in dispute. Still, back in 2001, the authors seemed to think they had it all under control, stating:

"These are the first reported cases of germline mtDNA genetic modification which have led to the inheritance of two mtDNA populations in the children resulting from ooplasmic transplantation. These mtDNA fingerprints demonstrate that the transferred mitochondria can be replicated and maintained in the offspring, therefore being a genetic modification without potentially altering mitochondrial function."

It's relevant to understand that these children have inherited extra genes—that of TWO women and one man—and will be able to pass this extra set of genetic traits to their own offspring. One of the most shocking considerations here is that this was done—repeatedly—even though no one knows what the ramifications of having the genetic traits of three parents might be for the individual, or for their subsequent offspring.

Based on what I've learned about the genetic engineering of plants, I'm inclined to say the ramifications could potentially be vast, dire, and completely unexpected.

As a general, broad-strokes rule, it seems few scientists fond of gene-tinkering have a well-rounded or holistic view of living organisms, opting instead to view the human body as a machine. And as demonstrated with the multi-varied problems that have arisen from genetically engineered foods—from the development of superweeds and superpests, to the creation of a never-before-seen organism now linked to miscarriage and infertility—such a view is bound to lead you to the wrong conclusions...

Surprise, Surprise... "Unpredictable Outcomes" Reported

As it turns out, this type of genetic modification, called cytoplasmic transfer, is actually a hot topic among geneticists, but it's rarely published or discussed in the lay press, if at all—as evidenced by my own surprise when reading this decade-old piece of news.

Many follow-up reports continue to tout the high success of this method of treating infertility. But some, including a book put out by Cambridge Press, warns of the dangers and risks of this procedure. For example, the following excerpts from a report3 delivered during the 2003 World Congress on Controversies in Obstetrics, Gynecology & Infertility in Berlin raises questions about the less than thoughtful implementation of this technology, and some of the problems encountered:

"... Cytoplasmic control of preimplantation development is not a "new" concept, but ooplasm transfer have been amazingly rapidly applied in humans, with relative success, in the absence of extensive research to evaluate the efficacy and the potential risks of the method, resulting in some publications highlighting the potential dangers (Winston and Hardy 2002, DeRycke et al 2002, Templeton 2002), and unpredictable outcomes (Cummins 2001, 2002).

... A frank follow-up of ooplasmic transplantation pregnancies and infants reports that two out of 17 fetuses had an abnormal 45, XO karyotype. The authors assume the hypothesis of a link between chromosomal anomalies and oocytes manipulation, and reveal that one of the babies has been diagnosed at 18 months with Pervasive Developmental Disorder, a spectrum of autism-related diagnoses." [Emphasis mine]

So it didn't take long—less than two years, in fact—for reports of "unpredictable outcomes" to crop up. I for one am not surprised. It's somewhat disconcerting that so much of this research is taking place without open discussion about the ethical questions associated with it.

The US FDA appears to have begun looking at the ethics of ooplasmic transplantation, and in one powerpoint4 it is pointed out that an 18-month-old child born from this procedure has been diagnosed with autism (PDD), and that the incidence of chromosomal anomalies is known to be higher in children born from the procedure than the rate of major congenital abnormalities observed in the natural population.

The document also states that lack of testing and long-term follow-up of the children born from the procedure so far is a significant shortcoming, making evaluation of the safety and effectiveness of the technique very difficult. The genetic modification of humans appears to have been running alongside the genetic engineering of plants, being just a few years behind in terms of the technology being unleashed, and the lack of proper evaluation of health effects is apparently on par as well, which is to say near non-existent...

Could They Create Patentable Humans? Perhaps...

Another horrific side effect that has nothing to do with health per se, is the potential that making this procedure widely available may trigger a "patent" war; meaning these genetically modified humans could become patentable property.

Sound crazy?

You bet! But it's not outside the realm of possibility. The world is already embroiled in discussions about which genetically engineered life forms can and cannot be patented5, and biotech companies have secured patents on everything from genetically modified seeds to engineered animals of various kinds. Even human genes have already been patented!

As explained by the American Civil Liberties Union (ACLU)6:

"The U.S. Patent and Trademark Office (USPTO) grants patents on human genes, which means that the patent holders own the exclusive rights to those genetic sequences, their usage, and their chemical composition. Anyone who makes or uses a patented gene without permission of the patent holder – whether it be for commercial or noncommercial purposes – is committing patent infringement and can be sued by the patent holder for such infringement. Gene patents, like other patents, are granted for 20 years.

For example, Myriad Genetics, a private biotechnology company based in Utah, controls patents on the BRCA1 and BRCA2 genes [two genes associated with hereditary breast- and ovarian cancer]. Because of its patents, Myriad has the right to prevent anyone else from testing, studying, or even looking at these genes. It also holds the exclusive rights to any mutations along those genes. No one is allowed to do anything with the BRCA genes without Myriad's permission.

A 2005 study found that 4,382 of the 23,688 human genes in the National Center for Biotechnology Information's gene database are explicitly claimed as intellectual property. This means that nearly 20% of human genes are patented. In addition to the BRCA genes, genes associated with numerous diseases, both common and rare, are patented, including Alzheimer's disease, asthma, some forms of colon cancer, Canavan disease, hemochromatosis, some forms of muscular dystrophy, Long QT Syndrome, and many others."

If this sounds outrageous, illegal, and nonsensical, it's because it's all of those things. The ACLU claims to be engaged in a noble lawsuit against the US Patent and Trademark Office to stop the practice of issuing patents that are contrary to the law, which states only inventions can be patented—not naturally occurring parts of the human body. Still, the precedent has been clearly set. So what's to stop a company from eventually claiming patent rights on an entire individual?

Human Cloning Next?

According to the featured article7, "altering the human germline—in effect tinkering with the very make-up of our species—is a technique shunned by the vast majority of the world's scientists. Geneticists fear that one day this method could be used to create new races of humans with extra, desired characteristics such as strength or high intelligence."

But that's clearly not the end of the line in terms of where this technology might lead, if it hasn't already:

"... Jacques Cohen is regarded as a brilliant but controversial scientist who has pushed the boundaries of assisted reproduction technologies," Mail Online states8. "He developed a technique which allows infertile men to have their own children, by injecting sperm DNA straight into the egg in the lab. Prior to this, only infertile women were able to conceive using IVF.

Last year [2000], Professor Cohen said that his expertise would allow him to clone children—a prospect treated with horror by the mainstream scientific community. 'It would be an afternoon's work for one of my students,' he said, adding that he had been approached by 'at least three' individuals wishing to create a cloned child, but had turned down their requests."

That was then—12 years ago. One can only guess what might have transpired in laboratories such as that of Professor Cohen since then...


References:

1 UK Mail Online June 29, 2012

2 Human Reproduction 2001: 16(3); 513-516

3 Cytoplasmic Transfer: The Risks?

4 Ethical Issues in Human Ooplasm Transfer Experimentation, The Hastings Center, Lori P. Knowles LLB, BCL, MA, LLM

5 Patenting in Biotechnology - An Overview

6 American Civil Liberties Union, BRCA: Genes and Patents

7 See ref 1

8 See ref 1



1/08/2012

China Biotech In Review: China Unveils Biotech Development Plan 2010-2020



Πηγή: Seeking Alpha
Jan 8 2012

Government and Regulatory

To establish itself in the front rank of global biotech innovation, China has issued the National Program on Bioscience Technology Development 2010-2020. The program, which was issued by the Ministry of Science and Technology, establishes a series of ambitious, very specific goals for developing a world-class biotech industry in China. As a starter, China wants to produce three to five top biotech scientists with international reputations and Nobel Prize potential by 2020.

Deals and Transactions

Vivo Ventures, a California healthcare investment firm that invests in both US and China life science companies, closed its seventh fund, Vivo Ventures VII, at $375 million. In the US, the fund will target US companies in the later stage of development. Its China investments will seek enterprises that are producing revenues.

AstraZeneca (NYSE: AZN) plans to expand its branded generics business in China through M&A with China pharmas (see story). At the same time, it will also promote its patent-protected drugs in the PRC, according to the company. This week, the British drugmaker began construction on its new $230 million manufacturing facility in Taizhou’s China Medical City, a project that was announced in October 2011.

ProteoTech, a privately held Seattle-area biotech company, will collaborate with GSK China (NYSE:GSK) to develop a small molecule therapeutic aimed at Parkinson’s disease (see story). Steve Runnels, CEO of ProteoTech, told ChinaBio Today the agreement was signed with GSK’s China unit because its Shanghai research center has responsibility for development of CNS drugs in GSK’s system.

Trials and Approvals

China Kanghui Holdings (NYSE: KH), an orthopedic medical device maker based in Changzhou, said its wholly owned subsidiary, TGM Medical, received approvals from the FDA to market in the US two joint replacement systems: the Helicon Hip System and the Milestone Knee System, along with related surgical instruments (see story).

Company News

Darren Ji, MD, PhD, who has served as CEO of PharmaLegacy since its 2008 launch, announced he will step down from his CEO position and no longer be involved full-time with PharmaLegacy, a company that he helped to found. Dr. Ji will be involved in setting up and managing new ventures in China and Asia, while he remains an advisor to PharmaLegacy.

Ascletis, a US-China joint venture pharmaceutical company, received a 10 million RMB ($1.6 million) R&D grant from the Hangzhou National Hi-Tech Industrial Development Zone (HHTZ), the site of its China operations. According to Ascletis, the award is the largest grant ever made to a startup company from the HHTZ "5050 Plan.” Financial backing seems to come naturally to Ascletis. In April of 2011, Ascletis was launched with an initial funding of $100 million.


9/19/2011

China and India Making Inroads in Biotech Drugs


Πηγή: New York Times
By Gardiner Harris
Sep. 18 2011


Chinese and Indian drug makers have taken over much of the global trade in medicines and now manufacture more than 80 percent of the active ingredients in drugs sold worldwide. But they had never been able to copy the complex and expensive biotech medicines increasingly used to treat cancer, diabetes and other diseases in rich nations like the United States — until now.

These generic drug companies say they are on the verge of selling cheaper copies of such huge sellers as Herceptin for breast cancer, Avastinfor colon cancer, Rituxan for non-Hodgkin’s lymphoma and Enbrel for rheumatoid arthritis. Their entry into the market in the next year — made possible by hundreds of millions of dollars invested in biotechnology plants — could not only transform the care of patients in much of the world but also ignite a counterattack by major pharmaceutical companies and diplomats from richer countries.

Already, the Obama administration has been trying to stop an effort by poorer nations to strike a new international bargain that would allow them to get around patent rights and import cheaper Indian and Chinese knock-off drugs for cancer and other diseases, as they did to fight AIDS. The debate turns on whether diseases like cancer can be characterized as emergencies, or “epidemics.”

Rich nations and the pharmaceutical industry agreed 10 years ago to give up patent rights and the profits that come with them in the face of an AIDS pandemic that threatened to depopulate much of Africa, but they see deaths from cancer, diabetes and other noncommunicable diseases as less of an emergency and, in some cases, the inevitable consequence of better and longer living.

The debate has intensified in recent weeks, before world leaders gather at the United Nations on Monday and Tuesday to confront surging deaths from noncommunicable diseases, which cause two-thirds of all deaths. It is only the second global health issue that the United Nations General Assembly has deemed urgent enough to call a meeting to discuss.

Participants in the negotiations, which include nongovernmental organizations, described the Obama administration’s position on the issue and provided e-mails from European diplomats that laid out the American stance, which has been adopted in the agreement’s working draft.

Although the draft agreement for this week’s meeting at the United Nations offers no support for poor nations seeking freer patent rules to fight cancer and other noncommunicable diseases, their advocates have vowed to continue fighting to loosen those restrictions not only this week in New York but in continuing international trade negotiations around the world as well.

United States officials repeatedly declined to explain the American position, though Mark Toner, a State Department spokesman, said Friday, “Regardless of what you call it, this is clearly such a pressing challenge globally that world leaders are gathering in New York next week to discuss ways to confront this threat.”

The United States government has a long history of pushing for strong patent protections in international trade and other agreements to protect important domestic industries like pharmaceuticals and ensure continued incentives for further inventions.

The new biotech copycats are likely to stir sharp debate among advocates for the poor. Already, some contend that the billions spent to treat AIDS have crowded out cheap and simple solutions to other afflictions of poverty, like childhood diarrhea.

The copycats will be less expensive than the originals, but they will never be cheap. It is unlikely that many African nations will be able to afford such a costly medicine for breast cancer, when far cheaper ones for colon and testicular cancer are going wanting.

Dr. Yusuf K. Hamied, chairman of the Indian drug giant Cipla Ltd., electrified the global health community a decade ago when he said he could produce cocktails of AIDS medicines for $1 per day — a fraction of the price charged by branded pharmaceutical companies. That price has since fallen to 20 cents per day, and more than six million people in the developing world now receive treatment, up from little more than 2,000 in 2001.

Dr. Hamied said in a telephone interview last week that he and a Chinese partner, BioMab, had together invested $165 million to build plants in India and China to produce at least a dozen biotech medicines. Other Indian companies have also built such plants. Since these medicines are made with genetically engineered bacteria, they must be tested extensively in patients before sale.

Once those tests are complete, Dr. Hamied promised to sell the drugs at a third of their usual prices, which typically cost tens of thousands of dollars for a course of treatment.

“And once we recover our costs, our prices will fall further,” he said. “A lot further.”

Dr. Peter Piot, a former director of U.N.AIDS, the United Nations AIDS agency, said the parallels between the current dilemma over cancer drugs and the one 10 years ago over AIDS medicines were striking. “Without a major reduction in the prices of the essential oncology drugs, there’s no way we can really improve survival from cancer,” said Dr. Piot, currently the director of the London School of Hygiene and Tropical Medicine.

But he also said he was more cautious about the promise of generics this time, because biotech medicines were not easy to copy. “I believe these medicines will make a huge difference, but I would like to see the evidence that the quality is good before giving it to my patients or taking it myself,” he said.

Having suffered global opprobrium 10 years ago when they were seen as blocking efforts to save the lives of millions of poor AIDS patients, executives for branded drug makers are far more cautious this time about insisting that high prices are necessary. Sara Radcliffe, a spokeswoman for the Biotechnology Industry Organization, said companies supported copycat versions of biotech medicines as long as “countries do not abuse the flexibilities in international law with respect to compulsory licensing in true public health emergencies.”

Patents generally provide inventors rights to 20 years of exclusive sales, but international law allows countries to force companies to share those rights with competitors under a variety of circumstances, including to protect public health. Even then, countries are generally not allowed to export the products that result from forced patent sharing except under dire circumstances.

But the only way poor countries can get drugs that result from shared patent rights is if another country exports those medicines to them under emergency exceptions.

In retrospect, the battle 10 years ago over AIDS medicines was a small skirmish compared with the one likely to erupt over cancer, diabetes and heart medicines. The AIDS drug market was never a major moneymaker for global drug giants, while cancer and diabetes drugs are central to the companies’ very survival. Roche Holding Ltd. earns $19 billion annually, or half its annual drug sales, selling Rituxan, Avastin and Herceptin. And sales of Herceptin have been rising faster in the developing world than in richer nations — making the developing world a crucial market. For middle-income countries straining to provide the best medicine possible, the new copycat biotechs will almost certainly be warmly received.

Mexico alone spends about $120 million buying Herceptin to treat women with breast cancer, which is nearly one-half of 1 percent of all government spending on health care, said Dr. Alejandro Mohar, general director of the Mexican National Cancer Institute. In 2007, Mexico guaranteed access to Herceptin for all women with breast cancer through a public insurance program.

“We would love to have better access to better drugs,” Dr. Mohar said. “This debate is going to heat up.”

Hermillia Villegas, a 47-year-old mother of two in Jalisco, Mexico, recently learned that she had a virulent form of breast cancer that responded well to treatment with Herceptin. Her husband is a janitor, and her doctor initially told her that each of 17 treatments with Herceptin would cost her more than $3,000.

“I don’t have that kind of money,” she said in a telephone interview. The new health insurance program, which pays for the whole cost of the drug, has saved her life, she said.